Combinatorial pattern matching

InhaltsverzeichnisSorting by Reversals in Subquadratic Time.Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs.Sorting by Length-Weighted Reversals: Dealing with Signs and Circularity.Optimizing Multiple Spaced Seeds for Homology Search.Approximate Labelled Subtree Homeomorphism.On the Average Sequence Complexity.Approximate Point Set Pattern Matching on Sequences and Planes.Finding Biclusters by Random Projections.Real-Time String Matching in Sublinear Space.On the k-Closest Substring and k-Consensus Pattern Problems.A Trie-Based Approach for Compacting Automata.A Simple Optimal Representation for Balanced Parentheses.Two Algorithms for LCS Consecutive Suffix Alignment.Efficient Algorithms for Finding Submasses in Weighted Strings.Maximum Agreement and Compatible Supertrees.Polynomial-Time Algorithms for the Ordered Maximum Agreement Subtree Problem.Small Phylogeny Problem: Character Evolution Trees.The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices.A Computational Model for RNA Multiple Structural Alignment.Computational Design of New and Recombinant Selenoproteins.A Combinatorial Shape Matching Algorithm for Rigid Protein Docking.Multi-seed Lossless Filtration.New Results for the 2-Interval Pattern Problem.A Linear-Time Algorithm for Computing Translocation Distance between Signed Genomes.Sparse Normalized Local Alignment.Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences.Maximal Common Connected Sets of Interval Graphs.Performing Local Similarity Searches with Variable Length Seeds.Reversal Distance without Hurdles and Fortresses.A Fast Set Intersection Algorithm for Sorted Sequences.Faster Two Dimensional Pattern Matching with Rotations.Compressed Compact Suffix Arrays.Approximate String Matching Using Compressed Suffix Arrays.Compressed Index for a Dynamic Collection of Texts.Improved Single and Multiple Approximate String Matching.Average-Case Analysis of Approximate Trie Search.